it definitely looks like something is irritating it.....the bubble on the "stem" is likely just signs of growth.....odd that other parts are receding or not looking good....what do you have for fish in the tank?
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260g mixed reef, 105g sump, water blaster 7000 return, Bubble King SM 300 skimmer, Aqua Controller Jr, 4 radions, 3 Tunze 6055s,1 tunze 6065, 2 Vortech MP40s, Vortech MP20, Tunze ATO, GHL SA2 doser, 2 TLF reactors (1 carbon, 1 rowa). http://www.canreef.com/vbulletin/showthread.php?t=50034 . Tank Video here http://www.vimeo.com/2304609 and here http://www.vimeo.com/16591694
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