Hey enigma,
I don't know if you remember the cyano outbreak post that i had made, but i didn't siphon any out at all. My personal thinking was that when i disturbed the sand bed when moved the tank, that is what caused the outbreak because of the garbage that was released. So all i did was really maintain my normal maintenance duties, cut back my feeding a hair and just waited it out. Took me 3 to almost 4 weeks to rid of it. My setup is under radions and i saw the same thing as you, a dark red wine color that would go away at night and grow during the day. I did replace my chemistry elite, and added a bit more macro to my hob fuge.
So yeah your leds might be making it "look" worse than it is. Hopefully it goes away for ya.
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