Try increasing the flow first.  I find that this works for me when I have cyano (aka red slime).  You are probably getting an explosion of algae because your tank is going through a mini cycle from when you cleaned the rock off. 
		
	
		
		
		
		
			
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				32"x32"x20" Cube-ish tank
			 
		
		
		
		
	
		
			
			
			
			
			
			
			
			
			
				
			
			
		 
		
	
	
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