I have a bit of red bubble algae in my tank. I usualy cover the bubble with the open end of a turkey baster, give the bubble a scrape and suck everything up at the same time. This makes sure that the bubble doesn't release its spores into the tank. I can only do this for the algae I can get at, but it seems to help. You can try an emerald crab, but i have been told they tend to nip corals the odd time.
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