yes it would be best to ultimately replace the bioballs with LR rubble over time... preferably a few weeks.  maybe a third a week?  I like to use pieces of rubble that are arguably golf ball size.  make sure you remove the false bottom of the second chamber so there's more space for rubble. 
 
there's a few other simple mods that can be done to improve the saltwater function of the BC.   
1st chamber:I removed the stupid carbon filter stock pad and replaced it with a sock full of carbon (easier and cheaper to refill with carbon).  I also stick a visitherm stealth heater in there.  WIDEN the gap between chamber 1 and 2... do not make it deeper.  I used a pair of wire cutters. 
2nd: remove false bottom and fill with rubble as above.  the bottom piece might stick a little; I had to use a bent coat hanger to get it out. 
3rd:replace stock pump with a maxi-jet pump... can't remember which one would be appropriate for a 29g BC.   
I also took out the stock flow difuser and tuck in a y-piece and loc line to split the flow.  you can vary this piece however you like.  I like having one with a narrow diffuser to stir up the surface and the other end pointed at the front of the tank. 
unfortunately I can't think of any simple or cheap mods for lighting.  nanocustoms and nano-reef.com should have a lot of good ideas though. 
		
	
		
		
		
		
		
	
		
			
			
			
			
				 
			
			
			
			
			
			
				
			
			
		 
		
	
	
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