Maybe the tomato is stressing it, aren't tomatoes fairly rough with their host ? My suggestion is to watch the clownfish behaviour in the anemone, and feed that bad boy once a day from now on to get his color back. It is looking like it's bleached (or bleaching) Your lighting is sufficient... so I am not too sure .. Surely water paramaters are all well? Like I mentioned, watch the clown and how rough he is with his host, and feed it once a day from now on , and see if this starts to help.
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